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Cleaved antitrypsin with P10 Pro, and P9-P6 Asp
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EZX PDB ENTRY 1EZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 295 0.1M MES/NaOH, 30% PEG 400, 35% glycerol, pH 6, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.23 α = 90 b = 121.88 β = 113.88 c = 43.22 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97950 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 34.04 98.9 0.068 0.068 10.4 3.5 55516 55516 18.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.58 98.8 0.496 0.496 2.4 3.5 8057
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EZX 1.5 32.79 52634 2822 98.79 0.16235 0.15977 0.1576 0.21118 0.2091 RANDOM 21.412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 -0.04 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.773 r_dihedral_angle_4_deg 20.797 r_dihedral_angle_3_deg 13.445 r_sphericity_free 12.395 r_sphericity_bonded 7.175 r_scangle_it 6.925 r_dihedral_angle_1_deg 6.595 r_scbond_it 4.828 r_mcangle_it 3.487 r_rigid_bond_restr 2.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.773 r_dihedral_angle_4_deg 20.797 r_dihedral_angle_3_deg 13.445 r_sphericity_free 12.395 r_sphericity_bonded 7.175 r_scangle_it 6.925 r_dihedral_angle_1_deg 6.595 r_scbond_it 4.828 r_mcangle_it 3.487 r_rigid_bond_restr 2.806 r_mcbond_it 2.377 r_angle_refined_deg 2.083 r_chiral_restr 0.151 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2882 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling