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Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03430) from Bacteroides ovatus at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.200000000M Ca(OAc)2, 40.000000000% PEG-600, 0.1M Cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.62 65.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.074 α = 90 b = 138.074 β = 90 c = 47.632 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2010-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97918,0.97932,0.91837 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 45.195 97.9 0.137 10.75 20195 -3 51.631
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 99.6 0.013 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 45.195 20187 1033 97.92 0.183 0.181 0.1812 0.22 0.2191 RANDOM 43.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.41 -1.2 -2.41 3.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.292 r_dihedral_angle_4_deg 15.696 r_dihedral_angle_3_deg 12.853 r_scangle_it 7.824 r_scbond_it 5.769 r_dihedral_angle_1_deg 4.97 r_mcangle_it 3.37 r_mcbond_it 1.814 r_angle_refined_deg 1.613 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.292 r_dihedral_angle_4_deg 15.696 r_dihedral_angle_3_deg 12.853 r_scangle_it 7.824 r_scbond_it 5.769 r_dihedral_angle_1_deg 4.97 r_mcangle_it 3.37 r_mcbond_it 1.814 r_angle_refined_deg 1.613 r_angle_other_deg 0.899 r_mcbond_other 0.412 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2447 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing