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Crystal Structure of Borrelia burgdorferi Pur-alpha
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 277 125 mM NaCl, 10 mM Hepes pH 8.0, 2.8 M sodium formate, equimolar addition of DNA oligonucleotide 5'AGG GTT AGG GTT-3' (not visible in structure), VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.19 43.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.71 α = 90 b = 58.33 β = 90 c = 141.84 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2008-05-20 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 70.946 98.7 0.097 0.082 12.9 3.5 30605 5 25.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 95.5 0.42 0.35 5.3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 37.39 31023 30605 816 99.3 0.187 0.185 0.1952 0.232 0.2413 RANDOM 23.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.02 -0.75 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.379 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_4_deg 9.877 r_dihedral_angle_1_deg 4.984 r_scangle_it 4.901 r_scbond_it 2.969 r_mcangle_it 2.017 r_angle_refined_deg 1.169 r_mcbond_it 1.057 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.379 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_4_deg 9.877 r_dihedral_angle_1_deg 4.984 r_scangle_it 4.901 r_scbond_it 2.969 r_mcangle_it 2.017 r_angle_refined_deg 1.169 r_mcbond_it 1.057 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1249 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 18
Software Software Software Name Purpose SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling SHELXD phasing