☰ Navigation Tabs
Crystal structure of putative glutathione transferase from Coccidioides immitis bound to glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LG6 PDB ENTRY 3LG6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 23.9 mg/mL protein, 0.2 M ammonium sulfate, 30% PEG 8000, 25% ethylene glycol as cryo-protectant, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.24 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.61 α = 90 b = 110.93 β = 90 c = 168.49 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2010-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 98.8 0.072 17.78 5.5 40173 39710 -3 21.509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 88.5 0.359 2.3 1.9 2926
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3LG6 1.85 50 39566 1985 98.49 0.16 0.158 0.1584 0.205 0.2027 RANDOM 15.886
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.35 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.525 r_dihedral_angle_4_deg 17.424 r_dihedral_angle_3_deg 12.01 r_dihedral_angle_1_deg 5.412 r_scangle_it 3.643 r_scbond_it 2.245 r_angle_refined_deg 1.377 r_mcangle_it 1.298 r_mcbond_it 0.749 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.525 r_dihedral_angle_4_deg 17.424 r_dihedral_angle_3_deg 12.01 r_dihedral_angle_1_deg 5.412 r_scangle_it 3.643 r_scbond_it 2.245 r_angle_refined_deg 1.377 r_mcangle_it 1.298 r_mcbond_it 0.749 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3409 Nucleic Acid Atoms Solvent Atoms 460 Heterogen Atoms 35
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection XDS data reduction