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Human cytomegalovirus terminase nuclease domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 58.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.86 α = 90 b = 87.96 β = 90 c = 188.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH 2 1 x-ray
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 1.000 ESRF ID14-2 2 SYNCHROTRON ESRF BEAMLINE ID14-4 1.00726 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.15 98.7 96.3 11.5 6 72855
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.2 91.1 2.6 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.15 19.99 70771 3760 98.71 0.2219 0.21921 0.2302 0.27201 0.2753 RANDOM 65.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.54 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.511 r_dihedral_angle_3_deg 22.146 r_dihedral_angle_4_deg 19.399 r_dihedral_angle_1_deg 7.263 r_scangle_it 5.219 r_scbond_it 3.471 r_mcangle_it 2.2 r_angle_refined_deg 2.119 r_mcbond_it 1.215 r_xyhbond_nbd_refined 0.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.511 r_dihedral_angle_3_deg 22.146 r_dihedral_angle_4_deg 19.399 r_dihedral_angle_1_deg 7.263 r_scangle_it 5.219 r_scbond_it 3.471 r_mcangle_it 2.2 r_angle_refined_deg 2.119 r_mcbond_it 1.215 r_xyhbond_nbd_refined 0.385 r_nbtor_refined 0.306 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.206 r_symmetry_vdw_refined 0.191 r_chiral_restr 0.168 r_metal_ion_refined 0.136 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7023 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing