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Crystal structure of the mature envelope glycoprotein complex (spontaneous cleavage) of Chikungunya virus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ALA P62E1 ENVELOPE GLYCOPROTEINS FROM CHIKUNGUNYA VIRUS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 8-12% PEG4K, 100mM NaAcetate, 100mM Hepes pH7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.65 53.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.24 α = 90 b = 99.61 β = 102.9 c = 107.1 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL PSI PILATUS 6M LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR 2009-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 98.6 0.073 12.2 3.5 20262 76.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.17 94.8 0.475 2 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT P62E1 ENVELOPE GLYCOPROTEINS FROM CHIKUNGUNYA VIRUS 3.01 50 20166 20166 1027 98.3 0.253 0.252 0.2719 0.275 0.2957 RANDOM 89.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.1013 -24.6049 -9.1578 4.0565
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.02 t_omega_torsion 1.78 t_angle_deg 0.96 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.02 t_omega_torsion 1.78 t_angle_deg 0.96 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5998 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 42
Software Software Software Name Purpose PHASER phasing BUSTER refinement XDS data reduction SCALA data scaling