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TUBULIN-NSC 613862: RB3 Stathmin-like domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SA0 PDB ENTRY 1SA0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 PEG, PIPES BUFFER, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 3.83 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 326.321 α = 90 b = 326.321 β = 90 c = 54.057 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2006-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 30 99.6 0.078 20 4 28503
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4 4.1 99.7 0.621 2.6 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SA0 4 20 26934 1435 99.8 0.22461 0.22318 0.2533 0.25012 0.2664 RANDOM 232.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.39 0.77 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.814 r_angle_refined_deg 1.795 r_scangle_it 0.993 r_scbond_it 0.606 r_symmetry_vdw_refined 0.367 r_mcangle_it 0.354 r_metal_ion_refined 0.324 r_nbd_refined 0.288 r_xyhbond_nbd_refined 0.226 r_mcbond_it 0.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.814 r_angle_refined_deg 1.795 r_scangle_it 0.993 r_scbond_it 0.606 r_symmetry_vdw_refined 0.367 r_mcangle_it 0.354 r_metal_ion_refined 0.324 r_nbd_refined 0.288 r_xyhbond_nbd_refined 0.226 r_mcbond_it 0.182 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.121 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14054 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 171
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction XSCALE data scaling