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Molecular Basis of the Inhibition of Henipa Viruses
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 295 tert-Butanol 35% (v/v), sodium citrate 0.1M, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 2.23 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.392 α = 90 b = 54.055 β = 90 c = 134.126 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.97893 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 67.1 92.5 0.059 13.7 5.4 20844 20844 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 75.3 0.427 2.6 5.1 1645
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WP8 1.8 67.1 20844 20844 1073 92.5 0.1963 0.1963 0.19383 0.192 0.24207 0.2399 RANDOM 28.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 2.34 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.284 r_dihedral_angle_3_deg 13.451 r_dihedral_angle_4_deg 12.066 r_dihedral_angle_1_deg 4.345 r_scangle_it 3.285 r_scbond_it 2.072 r_angle_refined_deg 1.206 r_mcangle_it 1.094 r_mcbond_it 0.733 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.284 r_dihedral_angle_3_deg 13.451 r_dihedral_angle_4_deg 12.066 r_dihedral_angle_1_deg 4.345 r_scangle_it 3.285 r_scbond_it 2.072 r_angle_refined_deg 1.206 r_mcangle_it 1.094 r_mcbond_it 0.733 r_nbtor_refined 0.292 r_symmetry_hbond_refined 0.202 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.164 r_symmetry_vdw_refined 0.146 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1738 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 23
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling