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Product complex of adenylate cyclase class IV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FJT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 45 MG/ML PTN, 7% PEG 5K MME, 0.1M AMS, 0.1M MES, PH 5.6, MACROSEEDING TO GROW BIG SINGLES, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.477 α = 90 b = 38.124 β = 98.71 c = 80.658 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 95.5 0.06 14.1 6.4 49467 49467
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 62.9 0.431 2 3241
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2FJT 1.6 16 49428 2516 95.2 0.219 0.219 0.218 0.2178 0.251 0.2517 RANDOM 28.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.22 -0.18 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.479 r_dihedral_angle_4_deg 17.967 r_dihedral_angle_3_deg 15.584 r_dihedral_angle_1_deg 6.916 r_scangle_it 4.736 r_scbond_it 3.249 r_mcangle_it 2.098 r_angle_refined_deg 1.804 r_mcbond_it 1.48 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.479 r_dihedral_angle_4_deg 17.967 r_dihedral_angle_3_deg 15.584 r_dihedral_angle_1_deg 6.916 r_scangle_it 4.736 r_scbond_it 3.249 r_mcangle_it 2.098 r_angle_refined_deg 1.804 r_mcbond_it 1.48 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.216 r_chiral_restr 0.138 r_xyhbond_nbd_refined 0.128 r_symmetry_hbond_refined 0.128 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2812 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 57
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection