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Crystal structure of beta-neurexin 3 without the splice insert 4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 27% PEG3350, 0.2M lithium sulfate, 0.1M sodium acetate, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.21 61.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.714 α = 90 b = 83.398 β = 90 c = 119.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm Si (111) crystal monochromator with vertical focusing mirror 2009-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.9795 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 85.6 0.12 0.12 14.2 5.9 59661 51068 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 48469 2591 99.71 0.18 0.17856 0.17667 0.1748 0.21453 0.2103 RANDOM 30.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.65 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.613 r_dihedral_angle_4_deg 16.967 r_dihedral_angle_3_deg 13.189 r_dihedral_angle_1_deg 6.51 r_scangle_it 2.334 r_scbond_it 1.449 r_angle_refined_deg 1.196 r_mcangle_it 0.794 r_mcbond_it 0.497 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.613 r_dihedral_angle_4_deg 16.967 r_dihedral_angle_3_deg 13.189 r_dihedral_angle_1_deg 6.51 r_scangle_it 2.334 r_scbond_it 1.449 r_angle_refined_deg 1.196 r_mcangle_it 0.794 r_mcbond_it 0.497 r_nbtor_refined 0.301 r_symmetry_hbond_refined 0.194 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4110 Nucleic Acid Atoms Solvent Atoms 727 Heterogen Atoms 158
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling