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Crystal Structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Nitrite at pH 7.4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 297 Ammonium phosphate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1.94 36.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.301 α = 90 b = 42.909 β = 94.05 c = 52.46 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91892 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 30.53 97.7 0.038 30694
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.44 93.7 0.193
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 15 30669 29136 1533 100 0.13889 0.13641 0.1339 0.18717 0.1851 RANDOM 16.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.14 -0.41 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.2 r_dihedral_angle_4_deg 17.406 r_dihedral_angle_3_deg 12.137 r_scangle_it 7.328 r_dihedral_angle_1_deg 7.105 r_scbond_it 5.501 r_mcangle_it 4.153 r_mcbond_it 2.898 r_rigid_bond_restr 2.868 r_angle_refined_deg 2.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.2 r_dihedral_angle_4_deg 17.406 r_dihedral_angle_3_deg 12.137 r_scangle_it 7.328 r_dihedral_angle_1_deg 7.105 r_scbond_it 5.501 r_mcangle_it 4.153 r_mcbond_it 2.898 r_rigid_bond_restr 2.868 r_angle_refined_deg 2.219 r_chiral_restr 0.175 r_bond_refined_d 0.025 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1428 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 49
Software Software Software Name Purpose XDS data scaling MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling