3MSE

Crystal structure of C-terminal domain of PF110239.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529330 % PEG 400, 0.2 M Ammonium sulfate, 0.05 M Hepes 7.5, 2 mM AMPPNP, 4 mM CaCL2, MgCl2, 6.25 mM TCEp, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.261.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.757α = 90
b = 101.757β = 90
c = 44.895γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152010-03-24MSINGLE WAVELENGTH
21x-ray100CCDMARMOSAIC 225 mm CCD2009-09-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9792APS19-ID
2SYNCHROTRONCLSI BEAMLINE 08ID-10.9792CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.15099.80.0749.911.1158901585939.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.12.141000.6914.5511.2804

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.150158771582578999.670.2240.2240.2220.264RANDOM45.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.380.691.38-2.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.511
r_dihedral_angle_4_deg25.912
r_dihedral_angle_3_deg16.743
r_dihedral_angle_1_deg4.419
r_scangle_it3.034
r_scbond_it1.909
r_mcangle_it1.331
r_angle_refined_deg1.139
r_mcbond_it0.702
r_chiral_restr0.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.511
r_dihedral_angle_4_deg25.912
r_dihedral_angle_3_deg16.743
r_dihedral_angle_1_deg4.419
r_scangle_it3.034
r_scbond_it1.909
r_mcangle_it1.331
r_angle_refined_deg1.139
r_mcbond_it0.702
r_chiral_restr0.086
r_bond_refined_d0.011
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1377
Nucleic Acid Atoms
Solvent Atoms58
Heterogen Atoms12

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
SHELXSphasing