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Structure of EUTM in 2-D protein membrane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A1B PDB entry 2A1B (RESIDUES 2-90)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 2 M ammoniumsulfate, 100 mM sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.87 34.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.164 α = 90 b = 69.164 β = 90 c = 28.95 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Rh coated flat mirror. 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97946 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 17.3 81.1 0.078 20.1 11.1 4477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2A1B (RESIDUES 2-90) 2 17.29 4392 192 83.19 0.22641 0.22415 0.2297 0.28277 RANDOM 40.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -1.11 2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.299 r_dihedral_angle_3_deg 23.738 r_dihedral_angle_4_deg 8.199 r_dihedral_angle_1_deg 6.895 r_scangle_it 5.178 r_scbond_it 3.072 r_angle_refined_deg 2.459 r_mcangle_it 2.043 r_mcbond_it 1.153 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.299 r_dihedral_angle_3_deg 23.738 r_dihedral_angle_4_deg 8.199 r_dihedral_angle_1_deg 6.895 r_scangle_it 5.178 r_scbond_it 3.072 r_angle_refined_deg 2.459 r_mcangle_it 2.043 r_mcbond_it 1.153 r_angle_other_deg 0.884 r_mcbond_other 0.234 r_chiral_restr 0.129 r_bond_refined_d 0.026 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 678 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 10
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling