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Structure of EUTM in 2-D protein membrane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A1B PDB entry 2A1B (residues 2-90)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 100 MM SODIUM DIHYDROGEN PHOSPHATE, 100 MM POTASSIUMDIHYDROGENPHOSPHATE, 2 M SODIUM CHLORIDE, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.949 α = 90 b = 149.069 β = 120.01 c = 70.089 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Rh coated flat mirror 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97946 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 46.98 84.1 0.032 19.31 2.1 25180
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2A1B (residues 2-90) 2.7 46.98 25180 1382 100 0.2525 0.24783 0.2574 0.33641 RANDOM 33.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.19 -2.29 7.89 -5.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.572 r_dihedral_angle_3_deg 23.132 r_dihedral_angle_4_deg 18.505 r_dihedral_angle_1_deg 6.915 r_scangle_it 1.694 r_angle_refined_deg 1.454 r_scbond_it 0.951 r_mcangle_it 0.759 r_angle_other_deg 0.645 r_mcbond_it 0.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.572 r_dihedral_angle_3_deg 23.132 r_dihedral_angle_4_deg 18.505 r_dihedral_angle_1_deg 6.915 r_scangle_it 1.694 r_angle_refined_deg 1.454 r_scbond_it 0.951 r_mcangle_it 0.759 r_angle_other_deg 0.645 r_mcbond_it 0.408 r_chiral_restr 0.074 r_mcbond_other 0.056 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7844 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement