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Structure of Apo HasAp from Pseudomonas aeruginosa to 1.55A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ELL PDB ENTRY 3ELL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 1.6 M NaH2PO4/0.4 M K2HPO4, 100 mM phosphate-citrate, pH 4.2, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.984 α = 90 b = 65.247 β = 110.48 c = 38.343 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-01-29 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 96.5 0.076 10 3.7 21268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.61 72.4 0.323 2.1 1574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ELL 1.55 35.92 21220 1095 96.14 0.154 0.152 0.1669 0.178 0.1917 RANDOM 16.497
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -0.22 -0.34 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_3_deg 10.706 r_dihedral_angle_4_deg 7.174 r_dihedral_angle_1_deg 5.546 r_scangle_it 4.366 r_scbond_it 2.754 r_mcangle_it 1.624 r_angle_refined_deg 1.434 r_angle_other_deg 0.922 r_mcbond_it 0.891
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.932 r_dihedral_angle_3_deg 10.706 r_dihedral_angle_4_deg 7.174 r_dihedral_angle_1_deg 5.546 r_scangle_it 4.366 r_scbond_it 2.754 r_mcangle_it 1.624 r_angle_refined_deg 1.434 r_angle_other_deg 0.922 r_mcbond_it 0.891 r_mcbond_other 0.25 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1321 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling