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Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.15 42.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.396 α = 76.63 b = 79.298 β = 89.96 c = 93.407 γ = 89.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2009-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.14014 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 188056
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.65 19.82 170317 9058 94.97 0.20769 0.20612 0.2159 0.23742 0.2466 RANDOM 27.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.54 0.19 -0.07 -2.78 -0.83 4.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.354 r_dihedral_angle_4_deg 17.784 r_dihedral_angle_3_deg 14.415 r_dihedral_angle_1_deg 6.185 r_scangle_it 3.724 r_mcangle_it 3.308 r_scbond_it 2.596 r_mcbond_it 2.343 r_angle_refined_deg 1.26 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.354 r_dihedral_angle_4_deg 17.784 r_dihedral_angle_3_deg 14.415 r_dihedral_angle_1_deg 6.185 r_scangle_it 3.724 r_mcangle_it 3.308 r_scbond_it 2.596 r_mcbond_it 2.343 r_angle_refined_deg 1.26 r_nbtor_refined 0.302 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.128 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12765 Nucleic Acid Atoms Solvent Atoms 798 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement