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Refinement of placental alkaline phosphatase complexed with nitrophenyl
Crystallization Crystal Properties Matthews coefficient Solvent content 2.56 52.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.346 α = 90 b = 114.573 β = 90 c = 106.568 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.57 70.01 68708 3649 96.4 0.141 0.139 0.178 0.1439 RANDOM 20.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.75 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.862 r_dihedral_angle_4_deg 15.752 r_dihedral_angle_3_deg 12.458 r_dihedral_angle_1_deg 5.981 r_scangle_it 3.49 r_scbond_it 2.318 r_mcangle_it 1.362 r_angle_refined_deg 1.228 r_mcbond_it 0.854 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.862 r_dihedral_angle_4_deg 15.752 r_dihedral_angle_3_deg 12.458 r_dihedral_angle_1_deg 5.981 r_scangle_it 3.49 r_scbond_it 2.318 r_mcangle_it 1.362 r_angle_refined_deg 1.228 r_mcbond_it 0.854 r_nbtor_refined 0.31 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.203 r_metal_ion_refined 0.152 r_symmetry_hbond_refined 0.137 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3691 Nucleic Acid Atoms Solvent Atoms 570 Heterogen Atoms 109
Software Software Software Name Purpose REFMAC refinement