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Crystal structure of the complex of JAML and Coxsackie and Adenovirus receptor, CAR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 0.25 M LI-SULFATE, 0.1 M MES, 24% PEG 3350, pH 6.00, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.66 53.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.865 α = 90 b = 89.865 β = 90 c = 127.17 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD SI(111) DOUBLE CRYSTAL MONOCHROMETER. ADJUSTABLE FOCUSING MIRRORS IN K-B GEOMETRY 2007-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 40 99.7 0.091 0.091 12.7 4.6 14679
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 99.8 0.529 0.529 2.9 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 38.92 13927 729 99.8 0.229 0.227 0.2319 0.276 0.2768 RANDOM 68.212
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.44 0.89 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.71 r_dihedral_angle_3_deg 17.209 r_dihedral_angle_4_deg 14.946 r_dihedral_angle_1_deg 6.498 r_scangle_it 5.724 r_scbond_it 3.471 r_mcangle_it 1.976 r_angle_refined_deg 1.261 r_angle_other_deg 1 r_mcbond_it 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.71 r_dihedral_angle_3_deg 17.209 r_dihedral_angle_4_deg 14.946 r_dihedral_angle_1_deg 6.498 r_scangle_it 5.724 r_scbond_it 3.471 r_mcangle_it 1.976 r_angle_refined_deg 1.261 r_angle_other_deg 1 r_mcbond_it 0.98 r_symmetry_hbond_refined 0.245 r_symmetry_vdw_other 0.165 r_mcbond_other 0.149 r_xyhbond_nbd_refined 0.148 r_symmetry_vdw_refined 0.132 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3338 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 102
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data scaling