☰ Navigation Tabs
Crystal structure of DCR3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3K51 PDB ENTRY 3K51
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 290 0.2M sodium acetate, 1mM CaCl2, 0.1M sodium citrate, 10% PEG 4000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 3.91 68.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.019 α = 90 b = 130.019 β = 90 c = 96.026 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 0.073 18.9 7.3 8677 8677
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 0.793 1.2 5.7 859
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3K51 2.901 20 6010 169 88.17 0.28619 0.28535 0.2949 0.31481 0.3102 RANDOM 86.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.47 0.95 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.428 r_dihedral_angle_3_deg 19.838 r_scangle_it 16.004 r_dihedral_angle_4_deg 14.289 r_scbond_it 10.879 r_dihedral_angle_1_deg 7.869 r_mcangle_it 6.649 r_mcbond_it 4.144 r_angle_refined_deg 1.212 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.428 r_dihedral_angle_3_deg 19.838 r_scangle_it 16.004 r_dihedral_angle_4_deg 14.289 r_scbond_it 10.879 r_dihedral_angle_1_deg 7.869 r_mcangle_it 6.649 r_mcbond_it 4.144 r_angle_refined_deg 1.212 r_nbtor_refined 0.301 r_xyhbond_nbd_refined 0.137 r_nbd_refined 0.129 r_symmetry_vdw_refined 0.104 r_chiral_restr 0.089 r_symmetry_hbond_refined 0.033 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1004 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CBASS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling