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CASK-4M CaM Kinase Domain, AMPPNP-Mn2+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C0I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 12.5 % (v/v) ethylene glycol, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.9 α = 90 b = 62.005 β = 90 c = 100.608 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.87856 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 98.2 0.063 0.063 14.4 4.5 31627 1 1 51.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 83.8 0.497 0.497 2.2 2.7 1968
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3C0I 2.3 19.65 16714 15878 836 100 0.18192 0.18192 0.17913 0.174 0.23434 0.2299 RANDOM 43.539
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -1.04 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.788 r_dihedral_angle_4_deg 17.597 r_dihedral_angle_3_deg 16.673 r_dihedral_angle_1_deg 5.829 r_scangle_it 2.493 r_scbond_it 1.523 r_angle_refined_deg 1.324 r_mcangle_it 1.033 r_mcbond_it 0.589 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.788 r_dihedral_angle_4_deg 17.597 r_dihedral_angle_3_deg 16.673 r_dihedral_angle_1_deg 5.829 r_scangle_it 2.493 r_scbond_it 1.523 r_angle_refined_deg 1.324 r_mcangle_it 1.033 r_mcbond_it 0.589 r_nbtor_refined 0.303 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.133 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2414 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 32
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling