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CASK-4M CaM Kinase Domain, Mn2+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C0I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 12.5 % (v/v) ethylene glycol, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.943 α = 90 b = 61.811 β = 90 c = 101.463 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.87856 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 42.66 96.9 0.09 0.09 11.3 4.7 36351 1 1 35.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 84.4 0.568 0.568 1.3 2.7 1513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3C0I 2.2 30 18431 17889 969 97.06 0.21352 0.21352 0.21048 0.2037 0.26997 0.2612 RANDOM 35.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 -2.92 2.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_3_deg 16.964 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_1_deg 5.822 r_scangle_it 2.11 r_scbond_it 1.316 r_angle_refined_deg 1.248 r_mcangle_it 0.942 r_mcbond_it 0.549 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_3_deg 16.964 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_1_deg 5.822 r_scangle_it 2.11 r_scbond_it 1.316 r_angle_refined_deg 1.248 r_mcangle_it 0.942 r_mcbond_it 0.549 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2414 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling