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Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.49 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 2.0000% 2-propanol, 0.2000M zinc acetate, 0.1M sodium cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.7 54.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.161 α = 90 b = 147.472 β = 90 c = 73.434 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97932,0.97886 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 28.897 99.8 0.067 14.41 94843 -3 13.913
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.54 99.8 0.577 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.49 28.897 94819 4746 99.93 0.143 0.142 0.161 0.1779 RANDOM 10.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 0.41 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.276 r_dihedral_angle_4_deg 11.71 r_dihedral_angle_3_deg 11.09 r_dihedral_angle_1_deg 6.062 r_scangle_it 2.792 r_scbond_it 1.803 r_angle_refined_deg 1.533 r_mcangle_it 1.192 r_angle_other_deg 0.984 r_mcbond_it 0.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.276 r_dihedral_angle_4_deg 11.71 r_dihedral_angle_3_deg 11.09 r_dihedral_angle_1_deg 6.062 r_scangle_it 2.792 r_scbond_it 1.803 r_angle_refined_deg 1.533 r_mcangle_it 1.192 r_angle_other_deg 0.984 r_mcbond_it 0.703 r_mcbond_other 0.211 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3604 Nucleic Acid Atoms Solvent Atoms 749 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing