☰ Navigation Tabs
Anti-beta-amyloid antibody c706 fab in space group P21
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EO8 PDB ENTRY 1EO8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 20% PEG 3350, 0.2 M SODIUM THIOCYANATE; CRYO CONDITIONS: 0.1 M HEPES PH 7.0, 24% PEG 3350, 0.2 M SODIUM THIOCYANATE, 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.33 α = 90 b = 62.79 β = 95.06 c = 68.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RIGAKU SATURN 944 VARIMAX HF 2008-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 69 95.6 0.067 0.067 12.6 4.2 42232 42232 -3 24.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 85.4 0.364 2.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EO8 1.7 15 40833 40833 1325 92.5 0.20481 0.20481 0.20306 0.2133 0.2603 0.2613 RANDOM 36.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.26 0.95 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.049 r_dihedral_angle_4_deg 15.431 r_dihedral_angle_3_deg 12.166 r_scangle_it 11.609 r_scbond_it 8.143 r_dihedral_angle_1_deg 6.173 r_mcangle_it 4.553 r_mcbond_it 3.145 r_angle_refined_deg 1.195 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.049 r_dihedral_angle_4_deg 15.431 r_dihedral_angle_3_deg 12.166 r_scangle_it 11.609 r_scbond_it 8.143 r_dihedral_angle_1_deg 6.173 r_mcangle_it 4.553 r_mcbond_it 3.145 r_angle_refined_deg 1.195 r_nbtor_refined 0.295 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.18 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.109 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3291 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement d*TREK data reduction d*TREK data scaling