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POTRA1-2 of the periplasmic domain of Omp85 from Anabaena
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 292 0.2 M calcium chloride, 20 % PEG3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.06 40.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.366 α = 90 b = 108.366 β = 90 c = 60.238 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r SINGLE SILICON (111) MONOCHROMATOR 2009-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 0.102 14.7 7.8 23906 -4 38.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.13 100 0.498 3.2 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 50 19600 1056 100 0.198 0.195 0.2005 0.245 0.2583 RANDOM 26.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -0.52 -1.05 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.883 r_dihedral_angle_4_deg 23.133 r_dihedral_angle_3_deg 17.972 r_dihedral_angle_1_deg 6.045 r_scangle_it 3.333 r_scbond_it 1.843 r_angle_refined_deg 1.377 r_mcangle_it 1.144 r_angle_other_deg 1.11 r_mcbond_it 0.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.883 r_dihedral_angle_4_deg 23.133 r_dihedral_angle_3_deg 17.972 r_dihedral_angle_1_deg 6.045 r_scangle_it 3.333 r_scbond_it 1.843 r_angle_refined_deg 1.377 r_mcangle_it 1.144 r_angle_other_deg 1.11 r_mcbond_it 0.583 r_mcbond_other 0.098 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2511 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling