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Structure of bacterirhodopsin crystallized in betta-XylOC(16+4) meso phase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3W PDB ENTRY 1C3W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 in meso crystallization 298 in meso crystallization, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.348 α = 90 b = 61.348 β = 90 c = 109.787 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53.13 87.5 0.125 9.2 4.9 13746 13746 14.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 87 0.469 2.6 5 1989
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C3W 2 47.83 13711 13711 696 86.53 0.181 0.1856 0.203 0.2075 RANDOM 21.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.45 -8.45 16.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.471 r_dihedral_angle_4_deg 15.002 r_dihedral_angle_3_deg 12.176 r_dihedral_angle_1_deg 5.177 r_scangle_it 2.87 r_scbond_it 1.981 r_angle_refined_deg 1.537 r_mcangle_it 1.207 r_angle_other_deg 1.059 r_mcbond_it 0.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.471 r_dihedral_angle_4_deg 15.002 r_dihedral_angle_3_deg 12.176 r_dihedral_angle_1_deg 5.177 r_scangle_it 2.87 r_scbond_it 1.981 r_angle_refined_deg 1.537 r_mcangle_it 1.207 r_angle_other_deg 1.059 r_mcbond_it 0.707 r_mcbond_other 0.197 r_chiral_restr 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1719 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 50
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction