☰ Navigation Tabs
MALTODEXTRIN-BINDING PROTEIN WITH BOUND MALTOTRIOSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2MBP PDB ENTRY 2MBP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 PROTEIN WAS CRYSTALLIZED FROM 18% PEG 8000, 10 MM CITRATE, PH 6.2
Crystal Properties Matthews coefficient Solvent content 2.77 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.07 α = 90 b = 68.43 β = 112.51 c = 57.94 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 AREA DETECTOR XUONG-HAMLIN MULTIWIRE NA 1989-01-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 10 86 0.065 0.0969 13.88 3.7 39297 1 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.82 46 0.18 0.244 2.5 2.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS WITH 2MBP PDB ENTRY 2MBP 1.7 10 2 29814 75 0.164 27.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.1 p_staggered_tor 22.2 p_scangle_it 4.058 p_scbond_it 2.947 p_planar_tor 2.6 p_mcangle_it 1.814 p_multtor_nbd 0.224 p_xyhbond_nbd 0.215 p_singtor_nbd 0.197 p_chiral_restr 0.154
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.1 p_staggered_tor 22.2 p_scangle_it 4.058 p_scbond_it 2.947 p_planar_tor 2.6 p_mcangle_it 1.814 p_multtor_nbd 0.224 p_xyhbond_nbd 0.215 p_singtor_nbd 0.197 p_chiral_restr 0.154 p_planar_d 0.065 p_angle_d 0.053 p_bond_d 0.027 p_mcbond_it 0.027 p_plane_restr 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2878 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 34
Software Software Software Name Purpose PROTEIN model building CHAIN model building PROLSQ refinement SDMS data reduction SDMS data scaling PROTEIN phasing CHAIN phasing