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CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM LISTERIA MONOCYTOGENES, Triclinic FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BQT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 298 0.2M ammonium acetate, 0.1m Na citrate, 30% PEG 4000, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.81 32.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.062 α = 83.24 b = 33.549 β = 75.47 c = 40.784 γ = 89.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm SGX-CAT 2007-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 50 89 0.058 11.4 3.9 50049 50049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.49 82.5 0.26 4.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BQT 1.42 16.87 27987 1230 89.92 0.16883 0.1669 0.1743 0.20633 0.2164 RANDOM 13.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.07 0.1 -0.25 -0.12 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.095 r_dihedral_angle_3_deg 14.692 r_dihedral_angle_4_deg 8.027 r_dihedral_angle_1_deg 5.56 r_scangle_it 5.251 r_scbond_it 3.314 r_mcangle_it 1.997 r_angle_refined_deg 1.756 r_mcbond_it 1.144 r_angle_other_deg 1.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.095 r_dihedral_angle_3_deg 14.692 r_dihedral_angle_4_deg 8.027 r_dihedral_angle_1_deg 5.56 r_scangle_it 5.251 r_scbond_it 3.314 r_mcangle_it 1.997 r_angle_refined_deg 1.756 r_mcbond_it 1.144 r_angle_other_deg 1.011 r_mcbond_other 0.33 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1364 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling