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Crystal structure of PacI-DNA Enzyme product complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 22% PEG3K, 2.5% ethylene glycol, 10 mM MgSO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.87 57.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.089 α = 90 b = 114.927 β = 90 c = 114.322 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Double-crystal, Si(111) 2009-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0718 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 50 98.6 0.062 28.2 13.5 19148
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.98 92.4 0.266 11.1 1761
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.92 20.26 18941 976 98.81 0.173 0.172 0.1858 0.201 0.2125 RANDOM 45.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 3.55 -4.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.7 r_dihedral_angle_4_deg 20.405 r_dihedral_angle_3_deg 14.264 r_dihedral_angle_1_deg 5.199 r_scangle_it 4.172 r_scbond_it 2.767 r_mcangle_it 2.365 r_rigid_bond_restr 1.544 r_angle_refined_deg 1.305 r_mcbond_it 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.7 r_dihedral_angle_4_deg 20.405 r_dihedral_angle_3_deg 14.264 r_dihedral_angle_1_deg 5.199 r_scangle_it 4.172 r_scbond_it 2.767 r_mcangle_it 2.365 r_rigid_bond_restr 1.544 r_angle_refined_deg 1.305 r_mcbond_it 1.3 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1102 Nucleic Acid Atoms 367 Solvent Atoms 114 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction