X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.229828% PEG600, 50mM Lactate pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.4163.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.909α = 90
b = 95.909β = 90
c = 135.957γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MIRRORS2009-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4ANSLSX4A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72599.10.0669.23.55119919.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7399.80.723.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.72550837258599.10.140.1380.176RANDOM23.565
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.370.190.37-0.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.641
r_dihedral_angle_4_deg22.662
r_dihedral_angle_3_deg12.516
r_sphericity_free8.681
r_scangle_it4.866
r_dihedral_angle_1_deg4.556
r_scbond_it3.34
r_sphericity_bonded2.988
r_mcangle_it2.143
r_angle_other_deg2.131
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.641
r_dihedral_angle_4_deg22.662
r_dihedral_angle_3_deg12.516
r_sphericity_free8.681
r_scangle_it4.866
r_dihedral_angle_1_deg4.556
r_scbond_it3.34
r_sphericity_bonded2.988
r_mcangle_it2.143
r_angle_other_deg2.131
r_angle_refined_deg1.715
r_rigid_bond_restr1.675
r_mcbond_it1.426
r_mcbond_other0.629
r_chiral_restr0.286
r_bond_refined_d0.018
r_gen_planes_refined0.008
r_gen_planes_other0.001
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2413
Nucleic Acid Atoms
Solvent Atoms196
Heterogen Atoms80

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling