☰ Navigation Tabs
Crystal structure of Saro_0823 (YP_496102.1) a protein of unknown function from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.22 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.86 277 29.5000% polyethylene glycol 4000, 0.2000M magnesium chloride, 0.1M TRIS pH 8.86, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.05 39.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.401 α = 90 b = 65.19 β = 128.6 c = 59.73 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-12-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97883,0.91837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 45.531 98.6 0.09 10.24 71683 -3 8.037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.22 1.26 97.2 0.658 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.22 45.531 71683 3565 98.95 0.119 0.117 0.1224 0.148 0.1518 RANDOM 11.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.2 -0.39 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.744 r_dihedral_angle_4_deg 13.335 r_dihedral_angle_3_deg 10.682 r_dihedral_angle_1_deg 5.967 r_scangle_it 5.71 r_scbond_it 4.1 r_mcangle_it 2.921 r_mcbond_it 2.115 r_angle_refined_deg 1.537 r_rigid_bond_restr 1.351
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.744 r_dihedral_angle_4_deg 13.335 r_dihedral_angle_3_deg 10.682 r_dihedral_angle_1_deg 5.967 r_scangle_it 5.71 r_scbond_it 4.1 r_mcangle_it 2.921 r_mcbond_it 2.115 r_angle_refined_deg 1.537 r_rigid_bond_restr 1.351 r_angle_other_deg 0.891 r_mcbond_other 0.76 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2092 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction autoSHARP phasing