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Crystal structure of RpfF complexed with REC domain of RpfC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 285 100mM MES-Na, 20% PEG 4000, 200mM MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.913 α = 90 b = 130.913 β = 90 c = 156.471 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9795 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 97 56289 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 20 49730 2664 99.99 0.25113 0.25005 0.2501 0.27116 0.2707 RANDOM 56.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 -1.06 -2.12 3.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.47 r_dihedral_angle_4_deg 17.502 r_dihedral_angle_3_deg 15.169 r_dihedral_angle_1_deg 3.969 r_scangle_it 1.338 r_angle_refined_deg 0.904 r_scbond_it 0.726 r_mcangle_it 0.491 r_mcbond_it 0.25 r_chiral_restr 0.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.47 r_dihedral_angle_4_deg 17.502 r_dihedral_angle_3_deg 15.169 r_dihedral_angle_1_deg 3.969 r_scangle_it 1.338 r_angle_refined_deg 0.904 r_scbond_it 0.726 r_mcangle_it 0.491 r_mcbond_it 0.25 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8685 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 29
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection MOSFLM data reduction SCALA data scaling