☰ Navigation Tabs
A Zn-mediated tetrahedral protein lattice cage
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 25% PEG 1500, 0.1 M Bis-Tris, 0.2 M CaCl2 and 5 mM ZnCl2., pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.363 α = 90 b = 125.363 β = 90 c = 164.509 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, double crystal monochromator, toroid focusing mirror 2009-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.18 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 90.614 100 0.106 0.106 16.5 6 17431 17431
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 100 0.481 0.481 1.5 5.4 2495
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 41.27 16174 1257 99.98 0.20206 0.19791 0.1994 0.25558 0.2619 RANDOM 34.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.1 -0.21 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.975 r_dihedral_angle_4_deg 19.206 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_1_deg 4.742 r_scangle_it 2.379 r_scbond_it 1.546 r_angle_refined_deg 1.301 r_mcangle_it 0.889 r_mcbond_it 0.521 r_nbtor_refined 0.283
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.975 r_dihedral_angle_4_deg 19.206 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_1_deg 4.742 r_scangle_it 2.379 r_scbond_it 1.546 r_angle_refined_deg 1.301 r_mcangle_it 0.889 r_mcbond_it 0.521 r_nbtor_refined 0.283 r_symmetry_hbond_refined 0.217 r_symmetry_vdw_refined 0.215 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.203 r_metal_ion_refined 0.108 r_chiral_restr 0.091 r_symmetry_metal_ion_refined 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3256 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 200
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction MOLREP phasing