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Crystal structure of glutamine amido transferase from Methylobacillus Flagellatus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 10% PEG 3350, 0.2M sodium formate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.16 43.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.648 α = 65.85 b = 42.72 β = 77.41 c = 50.448 γ = 69.82
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97915 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 22.13 67.1 0.081 37566 37566
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 22.13 37566 37566 1985 67.1 0.12544 0.12544 0.12381 0.1368 0.15545 0.1622 RANDOM 7.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.3 0.08 0.21 0.17 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.207 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_3_deg 11.284 r_dihedral_angle_1_deg 6.017 r_scangle_it 3.609 r_scbond_it 2.467 r_angle_refined_deg 1.761 r_mcangle_it 1.529 r_angle_other_deg 1.001 r_mcbond_it 0.936
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.207 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_3_deg 11.284 r_dihedral_angle_1_deg 6.017 r_scangle_it 3.609 r_scbond_it 2.467 r_angle_refined_deg 1.761 r_mcangle_it 1.529 r_angle_other_deg 1.001 r_mcbond_it 0.936 r_mcbond_other 0.324 r_chiral_restr 0.104 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1963 Nucleic Acid Atoms Solvent Atoms 506 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHENIX model building REFMAC refinement DENZO data reduction SCALEPACK data scaling PHENIX phasing