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Structure of ribose 5-phosphate isomerase type B from Trypanosoma cruzi, soaked with allose-6-phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 20% PEG3350, 0.2M sodium acetate, 0.1 M BIS-TRIS propane, pH 8.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.99 58.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.763 α = 90 b = 92.763 β = 90 c = 93.094 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 65.71 90.1 0.105 0.105 16.3 6.5 18940 18940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 92.6 0.268 0.268 2.8 6.5 2802
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 30 18909 978 89.11 0.189 0.187 0.1862 0.232 0.232 RANDOM 21.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.67 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.906 r_dihedral_angle_4_deg 19.061 r_dihedral_angle_3_deg 12.61 r_dihedral_angle_1_deg 5.134 r_scangle_it 2.393 r_scbond_it 1.469 r_angle_refined_deg 1.128 r_mcangle_it 1.002 r_mcbond_it 0.592 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.906 r_dihedral_angle_4_deg 19.061 r_dihedral_angle_3_deg 12.61 r_dihedral_angle_1_deg 5.134 r_scangle_it 2.393 r_scbond_it 1.469 r_angle_refined_deg 1.128 r_mcangle_it 1.002 r_mcbond_it 0.592 r_nbtor_refined 0.297 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.179 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2340 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 10
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction