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A Zn-mediated asymmetric trimer of a cytochrome cb562 variant (D74A-RIDC1)
Crystallization Crystal Properties Matthews coefficient Solvent content 2.21 44.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.879 α = 90 b = 74.819 β = 90 c = 81.358 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APEX II CCD 2008-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 23.9 99.8 0.155 7.3 2 10014 9996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.66 81.1 0.53 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 23.9 9996 679 99.65 0.226 0.22 0.2188 0.313 0.3107 RANDOM 14.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.38 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.056 r_dihedral_angle_4_deg 24.367 r_dihedral_angle_3_deg 21.32 r_dihedral_angle_1_deg 5.808 r_scangle_it 2.574 r_scbond_it 1.582 r_angle_refined_deg 1.524 r_mcangle_it 0.98 r_mcbond_it 0.513 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.056 r_dihedral_angle_4_deg 24.367 r_dihedral_angle_3_deg 21.32 r_dihedral_angle_1_deg 5.808 r_scangle_it 2.574 r_scbond_it 1.582 r_angle_refined_deg 1.524 r_mcangle_it 0.98 r_mcbond_it 0.513 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2448 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 131
Software Software Software Name Purpose SAINT data scaling REFMAC refinement PDB_EXTRACT data extraction APEX data collection SAINT data reduction MOLREP phasing