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Crystal structure of Putative SnoaL-like polyketide cyclase (YP_563807.1) from SHEWANELLA DENITRIFICANS OS-217 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 1.8000M tri-ammonium citrate, No Buffer pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.17 43.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.843 α = 90.13 b = 56.51 β = 103.27 c = 57.537 γ = 102.85
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-11-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97951 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.599 84.8 0.108 5.34 1.99 57152 -3 16.816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.75 59.1 0.773 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.599 57131 2864 94.93 0.195 0.193 0.2092 0.238 0.248 RANDOM 13.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.4 0.23 0.55 -1.74 -0.23 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_4_deg 18.53 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 5.87 r_scangle_it 3.659 r_scbond_it 2.358 r_angle_refined_deg 1.501 r_mcangle_it 1.351 r_angle_other_deg 0.881 r_mcbond_it 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_4_deg 18.53 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 5.87 r_scangle_it 3.659 r_scbond_it 2.358 r_angle_refined_deg 1.501 r_mcangle_it 1.351 r_angle_other_deg 0.881 r_mcbond_it 0.813 r_mcbond_other 0.262 r_chiral_restr 0.096 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4433 Nucleic Acid Atoms Solvent Atoms 570 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction