☰ Navigation Tabs
Crystal Structure of Camphor-Bound CYP101D1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LXH PDB ENTRY 3LXH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 291 0.1M Tris, pH 8.2, 12% 1,4-dioxane, 1.6M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.42 64.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.637 α = 90 b = 151.637 β = 90 c = 195.403 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2008-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 100 0.089 35.2 17.6 67625 67612 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 100 0.393 7.4 17.6 6616
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3LXH 2.2 50 64153 64076 3412 99.88 0.19173 0.18938 0.1878 0.23608 0.2347 RANDOM 25.518
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.007 r_dihedral_angle_4_deg 18.673 r_dihedral_angle_3_deg 16.803 r_dihedral_angle_1_deg 5.582 r_scangle_it 3.456 r_scbond_it 2.123 r_angle_refined_deg 1.604 r_mcangle_it 1.157 r_mcbond_it 0.588 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.007 r_dihedral_angle_4_deg 18.673 r_dihedral_angle_3_deg 16.803 r_dihedral_angle_1_deg 5.582 r_scangle_it 3.456 r_scbond_it 2.123 r_angle_refined_deg 1.604 r_mcangle_it 1.157 r_mcbond_it 0.588 r_chiral_restr 0.13 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6471 Nucleic Acid Atoms Solvent Atoms 810 Heterogen Atoms 128
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling