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Crystal structure of Putative bacterial transcription regulation protein (NP_372959.1) from Staphylococcus aureus MU50 at 1.81 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 277 0.2000M NH4F, 20.0000% PEG-3350, No Buffer pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.179 α = 90 b = 62.482 β = 93.33 c = 105.075 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-11-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97932,0.97949 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 29.192 94.6 0.055 9.13 39778 -3 18.432
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.87 87.3 0.421 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.81 29.192 39762 2007 98.89 0.178 0.176 0.218 0.2187 RANDOM 15.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 0.69 0.07 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.865 r_dihedral_angle_4_deg 18.348 r_dihedral_angle_3_deg 10.938 r_dihedral_angle_1_deg 4.32 r_scangle_it 2.816 r_scbond_it 1.7 r_angle_refined_deg 1.41 r_mcangle_it 1.05 r_angle_other_deg 0.759 r_mcbond_it 0.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.865 r_dihedral_angle_4_deg 18.348 r_dihedral_angle_3_deg 10.938 r_dihedral_angle_1_deg 4.32 r_scangle_it 2.816 r_scbond_it 1.7 r_angle_refined_deg 1.41 r_mcangle_it 1.05 r_angle_other_deg 0.759 r_mcbond_it 0.574 r_mcbond_other 0.149 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3668 Nucleic Acid Atoms Solvent Atoms 322 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing