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Crystal structure of LS24, A Seed Albumin from Lathyrus sativus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 10% (w/v) PEG 200000, 0.1M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.75 55.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.17 α = 90 b = 88.14 β = 90 c = 154.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH Mirrors 2006-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 0.129 5.2 3.4 54633
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 0.491 1.9 3.3 8105
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.2 47.63 49032 5549 93.45 0.24662 0.24441 0.2499 0.266 0.2707 RANDOM 16.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 3.76 -2.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.736 r_dihedral_angle_3_deg 18.97 r_dihedral_angle_4_deg 18.815 r_dihedral_angle_1_deg 5.023 r_angle_refined_deg 1.963 r_scangle_it 1.593 r_scbond_it 1.226 r_mcangle_it 0.757 r_mcbond_it 0.519 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.736 r_dihedral_angle_3_deg 18.97 r_dihedral_angle_4_deg 18.815 r_dihedral_angle_1_deg 5.023 r_angle_refined_deg 1.963 r_scangle_it 1.593 r_scbond_it 1.226 r_mcangle_it 0.757 r_mcbond_it 0.519 r_nbtor_refined 0.328 r_symmetry_hbond_refined 0.259 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.125 r_metal_ion_refined 0.032 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7220 Nucleic Acid Atoms Solvent Atoms 565 Heterogen Atoms 26
Software Software Software Name Purpose MAR345dtb data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling