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Crystal structure of PBPA from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 292 35% PEG 1000, 0.2M ammonium acetate, 0.1 M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.89 34.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.6 α = 90 b = 120.6 β = 90 c = 92.2 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 225 mm 2005-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97932,0.97946,0.97180 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 36.3 99.6 0.076 45.9 11.2 47630 47630 42.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.12 99.9 0.548 2.6 9.8 4701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 36.3 47630 47630 2388 99.83 0.217 0.217 0.215 0.2127 0.252 0.2531 RANDOM 44.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.37 -0.74 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.013 r_dihedral_angle_4_deg 18.436 r_dihedral_angle_3_deg 15.811 r_dihedral_angle_1_deg 6.118 r_scangle_it 2.516 r_scbond_it 1.578 r_angle_refined_deg 1.303 r_mcangle_it 1.064 r_mcbond_it 0.657 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.013 r_dihedral_angle_4_deg 18.436 r_dihedral_angle_3_deg 15.811 r_dihedral_angle_1_deg 6.118 r_scangle_it 2.516 r_scbond_it 1.578 r_angle_refined_deg 1.303 r_mcangle_it 1.064 r_mcbond_it 0.657 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.196 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5908 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling