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Crystal structure of phosphoglyceromutase from Burkholderia Pseudomallei 1710B with bound malonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 2.4 M SODIUM MALONATE, PH 7.0. Crystal transferred to 2.4 M Malonate, pH 7.0 plus 25% (v/v) Ethylene Glycol for Cryoprotection, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.82 67.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.62 α = 90 b = 119.62 β = 90 c = 103.67 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2009-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.34 99.9 0.085 18.88 49080 -3 33.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 99.9 0.721 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 46.34 49078 2481 0.172 0.17 0.1715 0.196 0.1964 RANDOM 27.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.936 r_dihedral_angle_4_deg 19.039 r_dihedral_angle_3_deg 13.217 r_dihedral_angle_1_deg 6.179 r_scangle_it 3.483 r_scbond_it 2.179 r_angle_refined_deg 1.385 r_mcangle_it 1.324 r_mcbond_it 0.738 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.936 r_dihedral_angle_4_deg 19.039 r_dihedral_angle_3_deg 13.217 r_dihedral_angle_1_deg 6.179 r_scangle_it 3.483 r_scbond_it 2.179 r_angle_refined_deg 1.385 r_mcangle_it 1.324 r_mcbond_it 0.738 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3765 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling