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Crystal structure of Staphylococcus aureus protein SA1388
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 298 0.1 M BIS-TRIS PROPANE, PH 8.5, 0.2 M MGCL2, 30% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.56 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.547 α = 90 b = 132.547 β = 90 c = 125.67 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2004-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 33.14 94.7 0.043 0.05 18.01 14.5 50416
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 73.8 0.216 0.249 1.96 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 33.14 50201 50201 2661 94.98 0.15117 0.14909 0.1633 0.19053 0.2072 RANDOM 15.643
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.787 r_dihedral_angle_3_deg 12.943 r_dihedral_angle_4_deg 10.676 r_dihedral_angle_1_deg 6.099 r_scangle_it 4.061 r_scbond_it 2.587 r_angle_refined_deg 1.546 r_mcangle_it 1.48 r_angle_other_deg 1.336 r_mcbond_it 0.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.787 r_dihedral_angle_3_deg 12.943 r_dihedral_angle_4_deg 10.676 r_dihedral_angle_1_deg 6.099 r_scangle_it 4.061 r_scbond_it 2.587 r_angle_refined_deg 1.546 r_mcangle_it 1.48 r_angle_other_deg 1.336 r_mcbond_it 0.827 r_mcbond_other 0.252 r_chiral_restr 0.236 r_bond_refined_d 0.019 r_gen_planes_other 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5137 Nucleic Acid Atoms Solvent Atoms 692 Heterogen Atoms 42
Software Software Software Name Purpose SBC-Collect data collection SOLVE phasing HKL-3000 phasing REFMAC refinement Coot model building DENZO data reduction SCALEPACK data scaling