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X-ray structure of bovine SC0067,Ca(2+)-S100B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 MPD, CaCl2, SC0067, Bis-Tris buffer, pH 7.0, sitting drop, temperature 298K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.11 41.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.607 α = 90 b = 59.122 β = 92.52 c = 103.998 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 50 98.4 0.075 11.6 4 21525
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.12 99.8 0.428 4 2123
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.04 19.36 21487 1094 96.86 0.238 0.235 0.2353 0.291 0.2894 RANDOM 45.314
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.15 -0.61 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.249 r_dihedral_angle_4_deg 23.752 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_1_deg 5.138 r_scangle_it 3.026 r_scbond_it 2.1 r_angle_refined_deg 1.557 r_mcangle_it 1.152 r_mcbond_it 0.84 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.249 r_dihedral_angle_4_deg 23.752 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_1_deg 5.138 r_scangle_it 3.026 r_scbond_it 2.1 r_angle_refined_deg 1.557 r_mcangle_it 1.152 r_mcbond_it 0.84 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.272 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.206 r_xyhbond_nbd_refined 0.199 r_metal_ion_refined 0.137 r_chiral_restr 0.133 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2881 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 50
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling