☰ Navigation Tabs
Xylanase II from Trichoderma reesei cocrystallized with tris-dipicolinate europium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 35 % PEG 3350, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.89 α = 90 b = 38.37 β = 99.83 c = 47.59 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 19.51 94 0.045 20.2 4.6 23239
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.63 1.72 89.1 0.161 8.8 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.64 19.51 22042 1182 94.22 0.1394 0.1378 0.1478 0.16768 0.1714 RANDOM 8.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.08 -0.16 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.516 r_dihedral_angle_4_deg 21.875 r_dihedral_angle_3_deg 10.588 r_sphericity_free 7.637 r_dihedral_angle_1_deg 7.396 r_angle_other_deg 4.421 r_scangle_it 4.049 r_scbond_it 2.826 r_angle_refined_deg 2.086 r_mcangle_it 1.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.516 r_dihedral_angle_4_deg 21.875 r_dihedral_angle_3_deg 10.588 r_sphericity_free 7.637 r_dihedral_angle_1_deg 7.396 r_angle_other_deg 4.421 r_scangle_it 4.049 r_scbond_it 2.826 r_angle_refined_deg 2.086 r_mcangle_it 1.894 r_mcbond_it 1.238 r_chiral_restr 0.144 r_gen_planes_other 0.031 r_bond_refined_d 0.025 r_gen_planes_refined 0.015 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1480 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 39
Software Software Software Name Purpose SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SCALA data scaling