☰ Navigation Tabs
Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.04 293 40% MPD, 5% PEG 8000, 0.1M cacodylate, pH 6.04, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.88 57.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.212 α = 113.38 b = 73.099 β = 94.18 c = 80.662 γ = 92.16
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.90 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 73 97.4 0.1 0.1 8.8 2.1 101215 22.389
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 96.9 0.43 0.431 1.9 2.2 31991
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 39.68 82592 4276 97.47 0.18705 0.18461 0.1856 0.23397 0.235 RANDOM 27.935
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.22 -0.16 0.06 -0.27 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.04 r_dihedral_angle_4_deg 18.139 r_dihedral_angle_3_deg 16.12 r_dihedral_angle_1_deg 5.803 r_scangle_it 3.778 r_scbond_it 2.356 r_angle_refined_deg 1.379 r_mcangle_it 1.353 r_mcbond_it 0.718 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.04 r_dihedral_angle_4_deg 18.139 r_dihedral_angle_3_deg 16.12 r_dihedral_angle_1_deg 5.803 r_scangle_it 3.778 r_scbond_it 2.356 r_angle_refined_deg 1.379 r_mcangle_it 1.353 r_mcbond_it 0.718 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7858 Nucleic Acid Atoms Solvent Atoms 789 Heterogen Atoms 96
Software Software Software Name Purpose DNA data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing