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Crystal structure of putative glutathione transferase from Coccidioides immitis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CZ2 PDB ENTRY 2CZ2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 CSHT screen condition B5, 0.2 M lithium sulfate, 0.1 M Tris pH 8.5, 30% PEG 4000 with 25% ethylene glycol as cryo-protectant, crystal tracking ID 206458b5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.29 46.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.74 α = 90 b = 99.64 β = 90 c = 184.36 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2010-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 99.7 0.121 13.23 6.8 49300
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 97.9 0.529 4.8 6 3520
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CZ2 2.2 30 49231 2492 99.68 0.173 0.171 0.1698 0.226 0.2241 RANDOM 23.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 1.34 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.596 r_dihedral_angle_4_deg 17.408 r_dihedral_angle_3_deg 13.615 r_dihedral_angle_1_deg 5.7 r_scangle_it 3.969 r_scbond_it 2.477 r_angle_refined_deg 1.463 r_mcangle_it 1.442 r_mcbond_it 0.767 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.596 r_dihedral_angle_4_deg 17.408 r_dihedral_angle_3_deg 13.615 r_dihedral_angle_1_deg 5.7 r_scangle_it 3.969 r_scbond_it 2.477 r_angle_refined_deg 1.463 r_mcangle_it 1.442 r_mcbond_it 0.767 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6834 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 20
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction