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The Crystal Structure of a CBS Domain from a Putative Metal Ion Transporter Bound to AMP from Pseudomonas syringae to 1.55A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 25% PEG 3350, 0.1M Hepes PH 7.5, 0.2M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.91 35.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.15 α = 90 b = 50.65 β = 112.26 c = 51.867 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 99.2 0.102 13.3 3.1 33409
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.61 99.7 0.652 3.1 3299
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.53 34.84 33130 1678 97.5 0.177 0.175 0.176 0.212 0.215 RANDOM 18.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.13 0.08 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 15.901 r_dihedral_angle_3_deg 11.311 r_dihedral_angle_1_deg 5.387 r_scangle_it 4.539 r_scbond_it 3.012 r_mcangle_it 1.891 r_angle_refined_deg 1.481 r_rigid_bond_restr 1.417 r_mcbond_it 1.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 15.901 r_dihedral_angle_3_deg 11.311 r_dihedral_angle_1_deg 5.387 r_scangle_it 4.539 r_scbond_it 3.012 r_mcangle_it 1.891 r_angle_refined_deg 1.481 r_rigid_bond_restr 1.417 r_mcbond_it 1.129 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1953 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 46
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing ARP/wARP model building Coot model building