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Crystal structure of T. celer L30e E90A/R92A variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H7M PDB ENTRY 1H7M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 289 18% PEG 3350, 0.1M sodium citrate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.86 33.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.913 α = 90 b = 53.097 β = 108.57 c = 33.466 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV VariMax HR optics 2007-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 31.72 98.1 0.073 14.8 3 7279 5 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96.3 0.244 3.7 3 1034
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H7M 1.8 31.72 1 6940 335 98.11 0.16701 0.16701 0.16521 0.172 0.20385 0.2093 RANDOM 12.713
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.3 -0.4 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.822 r_dihedral_angle_4_deg 18.787 r_dihedral_angle_3_deg 12.525 r_dihedral_angle_1_deg 6.111 r_scangle_it 3.868 r_scbond_it 2.879 r_angle_refined_deg 1.94 r_mcangle_it 1.694 r_mcbond_it 1.227 r_angle_other_deg 1.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.822 r_dihedral_angle_4_deg 18.787 r_dihedral_angle_3_deg 12.525 r_dihedral_angle_1_deg 6.111 r_scangle_it 3.868 r_scbond_it 2.879 r_angle_refined_deg 1.94 r_mcangle_it 1.694 r_mcbond_it 1.227 r_angle_other_deg 1.123 r_mcbond_other 0.381 r_symmetry_vdw_other 0.349 r_symmetry_hbond_refined 0.309 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.194 r_nbd_other 0.191 r_nbtor_refined 0.182 r_chiral_restr 0.13 r_symmetry_vdw_refined 0.118 r_nbtor_other 0.092 r_bond_refined_d 0.027 r_bond_other_d 0.021 r_gen_planes_refined 0.009 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 747 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling