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Urate oxidase complexed with 8-nitro xanthine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L8W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 8 291 0.05M TRIS BUFFER PH 8, 8% PEG 8000, 0.02M NACL , BATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.91 57.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.582 α = 90 b = 95.045 β = 90 c = 104.371 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r CURVATED MIRRORS 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.964 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 29.4 99.4 0.046 0.044 25 7.6 87363 81256 2 4 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 99.4 0.164 0.16 4.4 4.5 11863
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO THROUGHOUT 3L8W 1.35 10 4 85679 80616 3978 99.4 0.192 0.185 0.182 0.225 0.1936 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 9 2313 2648.5
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.076 s_anti_bump_dis_restr 0.074 s_angle_d 0.072 s_zero_chiral_vol 0.065 s_similar_adp_cmpnt 0.05 s_from_restr_planes 0.0301 s_bond_d 0.027 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 19
Software Software Software Name Purpose ADSC data collection SHELX model building SHELXL-97 refinement MOSFLM data reduction SCALA data scaling SHELX phasing