☰ Navigation Tabs
Two-site competitive inhibition in dehaloperoxidase-hemoglobin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QFK PDB ENTRY 2QFK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 277 0.2 M AMMONIUM SULFATE, 32% PEG 4000, PH 5.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.007 α = 90 b = 67.358 β = 90 c = 69.42 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.91942 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 35 98.7 0.052 22.5 4 121970 115854 2 6.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.06 1.09 93.8 0.318 3.8 3.3 8490
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2QFK 1.06 35 2 121970 115854 6116 98.7 0.169 0.168 0.1778 0.183 0.1926 RANDOM 10.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.1 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.01 r_dihedral_angle_4_deg 15.961 r_dihedral_angle_3_deg 14.42 r_dihedral_angle_1_deg 3.973 r_sphericity_free 2.377 r_scangle_it 1.898 r_sphericity_bonded 1.618 r_scbond_it 1.352 r_angle_refined_deg 1.17 r_mcangle_it 1.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.01 r_dihedral_angle_4_deg 15.961 r_dihedral_angle_3_deg 14.42 r_dihedral_angle_1_deg 3.973 r_sphericity_free 2.377 r_scangle_it 1.898 r_sphericity_bonded 1.618 r_scbond_it 1.352 r_angle_refined_deg 1.17 r_mcangle_it 1.074 r_rigid_bond_restr 0.74 r_mcbond_it 0.663 r_nbtor_refined 0.308 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.088 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2182 Nucleic Acid Atoms Solvent Atoms 356 Heterogen Atoms 112
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling